Flatpak have their own set of issues. One thing is, that Flatpak applications do not integrate that easily and perfect like a native package. Either rights are to given, you need to know what rights are needed and how to set it up. Theming can be an issue, because it uses its own libraries in the Flatpak eco system instead your current distributions theme and desktop environment.
But on the other hand, they have actually a permission system and are a little bit sandbox compared to normal applications. Packages often are distributed quickly and are up to date directly from the developers, and usually are not installed with root rights.
I’m pretty much a CLI guy as well and prefer native packages (Arch based, plus the AUR). But I also use Flatpaks for various reasons, alongside with AppImages.
Flatpak have their own set of issues. One thing is, that Flatpak applications do not integrate that easily and perfect like a native package. Either rights are to given, you need to know what rights are needed and how to set it up. Theming can be an issue, because it uses its own libraries in the Flatpak eco system instead your current distributions theme and desktop environment.
But on the other hand, they have actually a permission system and are a little bit sandbox compared to normal applications. Packages often are distributed quickly and are up to date directly from the developers, and usually are not installed with root rights.
I’m pretty much a CLI guy as well and prefer native packages (Arch based, plus the AUR). But I also use Flatpaks for various reasons, alongside with AppImages.